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Speleology in Kazakhstan

Shakalov on 04 Jul, 2018
Hello everyone!   I pleased to invite you to the official site of Central Asian Karstic-Speleological commission ("Kaspeko")   There, we regularly publish reports about our expeditions, articles and reports on speleotopics, lecture course for instructors, photos etc. ...

Speleology in Kazakhstan

Shakalov on 04 Jul, 2018
Hello everyone!   I pleased to invite you to the official site of Central Asian Karstic-Speleological commission ("Kaspeko")   There, we regularly publish reports about our expeditions, articles and reports on speleotopics, lecture course for instructors, photos etc. ...

Speleology in Kazakhstan

Shakalov on 11 Jul, 2012
Hello everyone!   I pleased to invite you to the official site of Central Asian Karstic-Speleological commission ("Kaspeko")   There, we regularly publish reports about our expeditions, articles and reports on speleotopics, lecture course for instructors, photos etc. ...

New publications on hypogene speleogenesis

Klimchouk on 26 Mar, 2012
Dear Colleagues, This is to draw your attention to several recent publications added to KarstBase, relevant to hypogenic karst/speleogenesis: Corrosion of limestone tablets in sulfidic ground-water: measurements and speleogenetic implications Galdenzi,

The deepest terrestrial animal

Klimchouk on 23 Feb, 2012
A recent publication of Spanish researchers describes the biology of Krubera Cave, including the deepest terrestrial animal ever found: Jordana, Rafael; Baquero, Enrique; Reboleira, Sofía and Sendra, Alberto. ...

Caves - landscapes without light

akop on 05 Feb, 2012
Exhibition dedicated to caves is taking place in the Vienna Natural History Museum   The exhibition at the Natural History Museum presents the surprising variety of caves and cave formations such as stalactites and various crystals. ...

Did you know?

That knots is various methods of securing or tying ropes or webbing material together by cavers [13]. see also prusik knot; prusiking.?

Checkout all 2699 terms in the KarstBase Glossary of Karst and Cave Terms

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Browse Speleogenesis Issues:

KarstBase a bibliography database in karst and cave science.

Featured articles from Cave & Karst Science Journals
Chemistry and Karst, White, William B.
Engineering challenges in Karst, Stevanović, Zoran; Milanović, Petar
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Featured articles from other Geoscience Journals
Geochemical and mineralogical fingerprints to distinguish the exploited ferruginous mineralisations of Grotta della Monaca (Calabria, Italy), Dimuccio, L.A.; Rodrigues, N.; Larocca, F.; Pratas, J.; Amado, A.M.; Batista de Carvalho, L.A.
Karst environment, Culver D.C.
Mushroom Speleothems: Stromatolites That Formed in the Absence of Phototrophs, Bontognali, Tomaso R.R.; D’Angeli Ilenia M.; Tisato, Nicola; Vasconcelos, Crisogono; Bernasconi, Stefano M.; Gonzales, Esteban R. G.; De Waele, Jo
Calculating flux to predict future cave radon concentrations, Rowberry, Matt; Marti, Xavi; Frontera, Carlos; Van De Wiel, Marco; Briestensky, Milos
See all featured articles from other geoscience journals

Search in KarstBase

Your search for microorganisms (Keyword) returned 74 results for the whole karstbase:
Showing 1 to 15 of 74
The role of microorganisms in the genesis of native sulfur deposits, 1964, Ivanov M. V.

A Preliminary Study of Heterotropic Microorganisms as Factors in Substrate Selection of Troglobitic Invertebrates, 1975, Dickson, Gary W.

The ecology of Metazoa in a settling basin of the Berlin Water Works and its importance in the process of purification of percolated surface water., 1976, Ritterbusch Barbara
Based upon the hypothesis that the Metazoa (nematoda and rotifera) in the interstitial stratum of a slow sand filter are of importance in the process of purification of surface water, a filter was built to check the substrate characteristics of different grain sizes compared with the natural soil. It was found that the granulometric composition of sands as found in the settling basins did have the best comparative screening properties. This was demonstrated by chemical analyses of NH4, NO2, NO3, PO4, KMnO4-consumption and O2-saturation. Only the NO3-graph is shown here. The importance of Metazoa in the process of filtering water was studied by inoculating metazoic microorganisms into the most efficient filter. Chemical analyses of the water did not reveal a significant change of water quality over that from a non-inoculated filter. Because of this result the Metazoa do not appear to act as an important component in the water purification by sand filtration.

In situ tracing experiments have proved to be reliable tools to get direct information on subsurface flow direction and flow parameters. Beside dyes, salts, radioisotopes and drift bodies, microbes can be used as tracers. In several comparative experiments carried out in porous and karst aquifers by the International Association of Tracer Hydrology (ATH) the microbial markers (bacteria and bacteriophages) have shown promising results. They are especially suitable to explain and model the subsurface transport of microorganisms

Dry Chinquapin oak (Quercus macrocarpa) and American elm (Ulmus americana) leaves were placed in four microcosms fed by groundwater springs to monitor changes in dry mass, ash-free dry mass, and microbial activity over a 35-day period. Oxygen microelectrodes were used to measure microbial activity and to estimate millimeter-scale heterogeneity in that activity. Oak leaves lost mass more slowly than elm leaves. Generally, there was a decrease in total dry weight over the first 14 days, after which total dry weight began to increase. However, there were consistent decreases in ash-free dry mass over the entire incubation period, suggesting that the material remaining after initial leaf decomposition trapped inorganic particles. Microbial activity was higher on elm leaves than on oak leaves, with peak activity occurring at 6 and 27 days, respectively. The level of oxygen saturation on the bottom surface of an elm leaf ranged between 0 and 75% within a 30-mm2 area. This spatial heterogeneity in O2 saturation disappeared when the water velocity increased from 0 to 6 cm s-1. Our results suggest that as leaves enter the groundwater, they decompose and provide substrate for microorganisms. The rate of decomposition depends on leaf type, small-scale variations in microbial activity, water velocity, and the length of submersion time. During the initial stages of decomposition, anoxic microzones are formed that could potentially be important to the biogeochemistry of the otherwise oxic aquifer

Microorganisms in Australian caves and their influence on speleogenesis, 1994, James J. M.

The twilight zone of a cave, an environment transitional between the well-illuminated environment outside the cave and the dark environment of the cave interior, is one of the most unusual microenvironments of the karst terrain. Walls in the twilight zone of caves on Grand Cayman and Cayman Brac are coated with a biofilm that incorporates a diverse assemblage of epilithic microbes and copious mucus. Most microbes are different from those found elsewhere in the karst terrains of the Cayman Islands, probably because they have adapted to life in the poorly illuminated twilight zone. None of the microbes employ an endolithic life mode, and less than 10% of them show evidence of calcification. The biofilm does, however, provide a medium in which a broad spectrum of destructive and constructive processes operate. Etching, the dominant destructive process, produces residual dolomite, residual calcite, blocky calcite, and spiky calcite. Constructive processes include precipitation of calcite, dolomite, gypsum, halite, and sylvite. Although filamentous microbes are common, examples of detrital grains trapped and bound to the substrate are rare. Destructive processes are more common than constructive ones

Cavities in the dolostones of the Cayman Formation (Miocene) on Grand Cayman and Cayman Brac commonly contain spar calcite cements and/or a variety of exogenetic (derived from sources external to the bedrock) and endogenetic (derived from sources in the bedrock) internal sediments. Micrite is a common component in many of these internal sediments. The exogenetic micrite, which is typically laminated and commonly contains fragments of marine biota, originated from the nearby shallow lagoons. The endogenetic micrite formed as a residue from the breakdown of spar calcite crystals by etching, as constructive and destructive envelopes developed around spar calcite crystals, by calcification of microbes, by breakdown of calcified filamentous microbes, and by precipitation from pore waters. Once produced, the endogenetic micrite may be transported from its place of origin by water flowing through the cavities. Endogenetic micrite can become mixed with the exogenetic micrite. Subsequently, it is impossible to recognize the origin of individual particles because the particles in endogenetic micrite are morphologically like the particles in exogenetic micrite. Formation of endogenetic micrite is controlled by numerous extrinsic and intrinsic parameters. In the Cayman Formation, for example, most endogenetic micrite is produced by etching of meteoric calcite crystals that formed as a cement in the cavities or by microbial calcification. As a result, the distribution of the endogenetic micrite is ultimately controlled by the distribution of the calcite cement and/or the microbes-factors controlled by numerous other extrinsic variables. Irrespective of the factors involved in its formation, it is apparent that endogenetic micrite can be produced by a variety of processes that are operating in the confines of cavities in karst terrains

Thermodynamic equilibrium, kinetics, activation barriers, and reaction mechanisms for chemical reactions in Karst Terrains, 1997, White W. B. ,
Chemical reactions pertinent to karst systems divide broadly into (a) speciation reactions within aqueous solutions, (b) dissolution/precipitation and other acid/base reactions between aqueous solutions and solid minerals, and (c) redox reactions involving various carbon and sulfur-bearing species. As a backdrop against which other chemistry can be evaluated, selected phase diagrams and equilibrium speciation diagrams were calculated for the system Ca--Mg--O--H--C--S. The kinetics of reactions within this system span time scales from milliseconds for homogeneous reactions in solution through hundreds of hours for carbonate mineral dissolution reactions, to geologic time scales for reactions such as the aragonite/calcite inversion or the oxidation/reduction of native sulfur. In purely inorganic systems, kinetic barriers, typically on the order of tens of kJ/mole, are set by nucleation processes and by activated complex formation. Biological processes impact the purely inorganic chemistry by the following mechanisms: (a) Secretions and waste products from biological activity or consumption of CO2 by organisms changes the chemistry in the microenvironments of reaction surfaces. Oxidation potentials, pH, and ion activities may be modified, thus shifting equilibria. (b) Reaction rates may be increased due to modification of activated complexes and thus the activation barriers to reaction. (c) Organic compounds or microorganisms may act as substrates, thus lowering nucleation barriers. The preservation of microorganisms in cave deposits does not necessarily prove a cause and effect relationship

Turbidity and microorganisms in a karst spring, 1997, Nebbache S. , Loquet M. , Vinceslasakpa M. , Feeny V. ,
This study was focused mainly on relations between turbidity and bacterial contamination of a karst spring. The data from the resurgence site show that for a turbidity <1,2 NTU, the spring is benefits of good sanitary conditions. The highest degree of bacterial contamination generally coincides with increased rainfall (automn and winter). This turbidity is also a factor of enhancing survival in particular-for fecal bacteria. correlations are established between turbidity and fecal bacteria, Those data show different origins of suspended particulate matters. The latter are transfered with superficial waters and rapid throughflow, or with water stored in 'systemes annexes karstifies' (storage units) then flushed out. Following the study of the first peak of turbidity, after recession, we find that turbidity is essentially due to the P3 class of particles (4.3 to 11 mu m) and that some microorganisms are carried by the following classes of articles: ammonifiers by class P1 (<1.7 mu m), mesophilic microflora by P2 (1.7 to 4.3 mu m), fecal streptbcocci by P3 (4.3 to 11 mu m), fecal coliforms and denitrifiers by P4 (11 to 27 mu m). A knowledge of turbidity and bacterial contamination relationships suppose to take into account the stational ecological events and the hydrodynamic of the karst but also the adhesion laws between bacteria and particles

Microorganisms as tracers in groundwater injection and recovery experiments: a review, 1997, Harvey R. W. ,
Modern day injection and recovery techniques designed to examine the transport behavior of microorganisms in groundwater have evolved from experiments conducted in the late 1800s, in which bacteria that form red or yellow pigments were used to trace flow paths through karst and fractured-rock aquifers. A number of subsequent groundwater hydrology studies employed bacteriophage that can be injected into aquifers at very high concentrations (e.g., 10(13) phage ml(-1)) and monitored through many log units of dilution to follow groundwater flow paths for great distances, particularly in karst terrain. Starting in the 1930s, microbial indicators of fecal contamination (particularly coliform bacteria and their coliphages) were employed as tracers to determine potential migration of pathogens in groundwater. Several injection and recovery experiments performed in the 1990s employed indigenous groundwater microorganisms (both cultured and uncultured) that are better able to survive under in situ conditions. Better methods for labeling native bacteria (e.g. by stable isotope labeling or inserting genetic markers, such as the ability to cause ice nucleation) are being developed that will not compromise the organisms' viability during the experimental time course

Phototrophic Microorganisms of the Pamukkale, 1997, Pentecost Allan, Bayari Serdar , Yesertener Cahit
The travertines at Pamukkale contain a diverse assemblage of phototrophs: 17 species of cyanobacteria, 16 diatoms, and 5 Chlorophyceae. Two communities were recognized on the active travertines: (1) surficial mats dominated by filamentous cyanobacteria, particularly Lyngbya (Phormidium) laminosum forming soft weakly mineralized layers to 10 mm thick, and (2) a predominantly endolithic assemblage, also dominated by cyanobacteria developing 2-5 mm below the travertine surface. The distribution of these communities is determined largely by water flow and the degree of desiccation. Two further communities are briefly described from nondepositing areas. Most of the active travertine consists of alternating layers of micrite and sparite 0.25-0.75 mm in thickness, which probably result from short-term fluctuations in water flow rather than diel events (photosynthesis, temperature). The presence of needle-fiber calcite in surface samples suggests that evaporation of water may play some part in travertine formation. The phototrophs appear to influence the travertine fabric only locally, where the surficial growths contain strings of calcite crystals ad-hering to the filaments, forming irregularly laminated layers. The hot-spring water is believed to be contaminated with sewage and agricultural effluent, but there was no evidence to suggest that this is currently affecting the travertine deposits. The water is supersaturated with respect to calcite when it contacts the travertine, and precipitation is primarily the result of carbon dioxide evasion. Water chemistry and discharge measurements indicate a total travertine deposition rate of 35 tonnes per day.

Bacteria in the Castleton karst, Derbyshire, England, 1997, Tranter J. , Gunn J. , Hunter C. , Perkins J. ,
The Castleton area contains an extensive and complex karst drainage system. Recharge is provided by allogenic stream sinks and by infiltration into a soil covered autogenic catchment. Concentrations of the sanitary indicator bacteria faecal coliform (FC) were measured weekly over a 84-week period at three stream-sinks (P6, P7 and P8) and at two contrasting springs (Russet Well and Peak Cavern Rising). Russet Well drains the allogenic catchment, but also receives some autogenic recharge whereas Peak Cavern Rising receives only autogenic recharge except at high stage when it functions as an overflow spring for the Russet Well system. Over the year as a whole and during each three-month season, median FC concentrations at P6 were significantly higher than at Russet Well. The difference was greatest during summer/autumn and was lowest in winter/spring and it appears that FC concentrations at the rising are a complex function of faecal inputs and flow-through time. The relationship between FC concentrations at Russet Well and at Peak Cavern Rising proved to be complex. Over the sampling period as a whole and during the spring and autumn there was no significant difference between median FC concentrations at the two risings; during the winter, when discharge was highest, median FC concentrations at Russet Well were significantly higher than at Peak Cavern Rising; and during the summer FC concentrations at Peak Cavern Rising were significantly higher than at Russet Well. The high FC concentrations in the sinking streams and at the risings suggest that there could be a health risk to cavers, especially during storm events and the summer. Furthermore, the fact that the waters from both springs contain significant concentrations of FC bacteria indicates that even soil covered karat systems are unable to filter out potentially harmful micro-organisms

Microbiological processes at the cave development and karstification, 1997, Benjamin Menne B.
The process of karstification can be regarded as part of the carbon-cycle of the earth. The assumption that microorganisms could play a role at the Speleogenesis was repeated in the past. To a guest extent, these considerations have been intensively contradicted. Microbiological sediment researches in European caves led however to new cognitions. The possible role of microorganisms at the karstification is represented with the models of the "Carbonatolyse" and "Bioconservation". Basis of these models is the "Festbettreaktor" (trickling filter), a common type of sewage water treatment. The formation of biofilms is described both as model and as experimental examinations. Data from some cavesystems are introduced. The consequences of the results for the karstwater and its use are briefly explained.

Geoecological system of karst , 1998, Bá, Rá, Nykevei Ilona

The paper presents some results of the karst geo-ecological system research. The first sphere of the karst-ecological system is the karst microclimate in accordance with the microclimatic factors. Macroclimate is responsible for the quantity and intensity of precipitation while microclimatic effects modify the quantity of water infiltrating to the rocks. Microclimate affects the development of vegetation, soil temperature and humidity. Millions of microorganisms live in the soil, changing the components of soil-air through the decomposition of organic materials and through their own metabolism. They also influence the physical and chemical soil properties indirectly. The inner dynamism of soil can prevent extreme changes occurring in the system, it can change, possibly leading to disturbance in the whole system. The changes due to external effects are reversible down to the rock boundary. When they have entered the rock layer, they become irreversible. Water in the rock layer is the transport agent of materials and energy. This water reaches the surface again in karst springs. Another irreversible process, the dripstone degradation can also be due to polluted water.

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