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Speleology in Kazakhstan

Shakalov on 04 Jul, 2018
Hello everyone!   I pleased to invite you to the official site of Central Asian Karstic-Speleological commission ("Kaspeko")   There, we regularly publish reports about our expeditions, articles and reports on speleotopics, lecture course for instructors, photos etc. ...

Speleology in Kazakhstan

Shakalov on 04 Jul, 2018
Hello everyone!   I pleased to invite you to the official site of Central Asian Karstic-Speleological commission ("Kaspeko")   There, we regularly publish reports about our expeditions, articles and reports on speleotopics, lecture course for instructors, photos etc. ...

Speleology in Kazakhstan

Shakalov on 11 Jul, 2012
Hello everyone!   I pleased to invite you to the official site of Central Asian Karstic-Speleological commission ("Kaspeko")   There, we regularly publish reports about our expeditions, articles and reports on speleotopics, lecture course for instructors, photos etc. ...

New publications on hypogene speleogenesis

Klimchouk on 26 Mar, 2012
Dear Colleagues, This is to draw your attention to several recent publications added to KarstBase, relevant to hypogenic karst/speleogenesis: Corrosion of limestone tablets in sulfidic ground-water: measurements and speleogenetic implications Galdenzi,

The deepest terrestrial animal

Klimchouk on 23 Feb, 2012
A recent publication of Spanish researchers describes the biology of Krubera Cave, including the deepest terrestrial animal ever found: Jordana, Rafael; Baquero, Enrique; Reboleira, Sofía and Sendra, Alberto. ...

Caves - landscapes without light

akop on 05 Feb, 2012
Exhibition dedicated to caves is taking place in the Vienna Natural History Museum   The exhibition at the Natural History Museum presents the surprising variety of caves and cave formations such as stalactites and various crystals. ...

Did you know?

That karst inselberg is a residual hill of soluble rock in a polje [20]. synonyms: (french.) inselberg karstique; (german.) karstinselberg (hum, mogote); (greek.) karstiki martyres lophi; (italian.) rilievo carsico residuo; (russian.) karstovy ostanec; (spanish.) relieve kastico residual; (turkish.) karst tepesi; (yugoslavian.) hum.?

Checkout all 2699 terms in the KarstBase Glossary of Karst and Cave Terms

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KarstBase a bibliography database in karst and cave science.

Featured articles from Cave & Karst Science Journals
Chemistry and Karst, White, William B.
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Karst environment, Culver D.C.
Mushroom Speleothems: Stromatolites That Formed in the Absence of Phototrophs, Bontognali, Tomaso R.R.; D’Angeli Ilenia M.; Tisato, Nicola; Vasconcelos, Crisogono; Bernasconi, Stefano M.; Gonzales, Esteban R. G.; De Waele, Jo
Calculating flux to predict future cave radon concentrations, Rowberry, Matt; Marti, Xavi; Frontera, Carlos; Van De Wiel, Marco; Briestensky, Milos
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Your search for oligotrophy (Keyword) returned 3 results for the whole karstbase:
Mn-Fe deposits in shallow cryptic marine environment: examples in northwestern Mediterranean submarine caves, 2001, Allouc J, Harmelin Jg,
Black coating of hard substrates by Mn and Fe oxides has long been reported from shallow, dark, submarine caves. However, these littoral metallic deposits have never been studied in detail, despite expected analogies with deep-sea polymetallic crusts. Submarine caves are characterized by darkness and low rates of exchanges with the open sea. Lack of primary production and confinement of inner water bodies result in marked oligotrophy and extremely reduced biomass, i.e. conditions close to those prevailing in deep-sea habitats. Field evidences suggested that the formation of Mn-Fe coatings was closely tied to these particular environmental conditions. The goal of this study was to examine the detailed features of Mn-Fe coatings from dark caves with different local conditions, and to try to identify the processes responsible for their deposition. Study sites and methods Three sublittoral, single-entrance, caves were sampled by scuba diving along the coasts of Provence (France, Mediterranean Sea) (fig. 1). The first site is a large karstic cave (Tremies Cave, 16 m depth at entrance floor, 60 m long; Marseille-Cassis area) with an ascending profile which results in a buffered thermal regime and markedly oligotrophic conditions due to warm water trapping in its upper part (fig. 1 and 2). Wall fragments were sampled at 30 m (medium confinement : zone B) and 60 in (strong confinement : zone C) from the cave entrance. The second site is a large tubular cavity open in conglomerate formations (3PP Cave, 15 m depth at entrance floor, 120 m long; La Ciotat) with a descending profile which results in relative permanence of winter temperatures within the inner parts, complex water circulation and presumed greater input of sedimented particles than in the preceding cave (fig.1 and 2). Wall samples were taken at 25 m, 70 in and 100 m from entrance. The third site is a small, horizontal, cave open in quartzite formations (Bagaud Cave, 7 in depth at entrance floor, about 10 m long; WNW of Port-Cros Island, bay of Hyeres). Sampling was performed on walls of a narrow corridor between an anterior room and a smaller inner room. A sporadic outflow of continental waters is located in the inner room. The samples were preserved in 50% ethylic alcohol or studied soon after their sampling. Before carbon coating and SEM examination, or microanalyses with SEM-associated spectrometers, they were treated in a 33% Chlorox solution and thereafter washed in demineralized water and dried. Micromorphology At low-medium magnification (<20,000), the aspect of coatings varies between caves and, especially, between inner-cave locations. All the described structures are made up of Mn and Fe oxides. In Tremies Cave, coatings of walls from zone B are composed of irregular erected constructions (height : 10s to 100s μm) formed by the aggregation of roughly ovoid primary concretions of about 10 μm (fig. 3). The surface of those primary concretions displays numerous lacunose to reticulate films (pores, about 0.5 μm in diameter, are often subrounded). Remnants of these films and organomorphic corpuscles occur also within the primary concretions (fig. 4). On younger substrates (broken wall exposed since 1970), primary concretions are poorly developed and no prominent construction is visible (fig. 5). In more confined conditions (zone C), the erected constructions of ancient coatings are smaller and less numerous than in zone B but are well individualized (fig. 6). In this zone: C, besides some remnants of lacunose to reticulate films (fig. 7), there is an appearance of filaments and ovoid corpuscles (height/width : 10-30/5-15 μm), which seem to be linked to filaments by a short stalk (fig. 8). In 3 PP Cave, at 25-70 m from entrance, wall coatings present porous heaps of primary concretions (fig. 9). The surface and the inside of the latter comprise remnants of lacunose to reticulate films that evoke those observed in Tremies Cave (fig. 10 and 11). On younger substrates (hard parts of sessile invertebrates), coatings are restricted to micrometric organomorphic corpuscles with some remnants of lacunose or fibrous films (fig. 12). At 100 in from the entrance, coatings are shaped by numerous erected constructions, more or less coalescing (fig. 13). Besides remnants of lacunose films, the primary concretions contain interlacing filaments (diameter : 0.2-0.3 μm) forming cords or veils (fig. 14). In Bagaud Cave, the primary concretions are aggregated in irregular heaps (fig. 15). Lacunose films are particularly frequent and tend to form three-dimensional mamillated structures that were not observed in the other caves (fig. 16). In particular, there is an appearance of tubular structures (fig. 17) and of numerous hemispheroidal structures (diameter : 4-5 μm) with an upper orifice (fig. 18 and 19). At higher magnification (20,000), whatever the cave and inner-cave location, the aspect of oxide deposits is rather smooth or, especially, microgranular (fig. 20). Mineral composition The composition of coatings is different between caves and according to their inner-cave location. In both large caves (Tremies and 3 PP), the Mn/Fe ratio increases with the distance from the cave entrance, i.e. when exchanges with the open sea diminish (fig. 21a). This trend is particularly clear in Tremies Cave, where the confinement gradient is strongly marked. Besides, the Mn/Fe ratio also seems to increase when films are present in the analysed volume (some cubic micrometers) (fig. 21b). In Bagaud Cave, the Mn/Fe ratio reaches high values despite the small size of this cave and its low confinement level. Discussion and conclusions SEM observations suggest that in each studied cave, the Mn-Fe coatings are biosedimentary deposits. Genesis of these deposits is assumed to result mainly from the replacement of biofilms (composed of cells and slime, i.e, of extracellular polymeric substance produced by microorganisms) generated by microbial populations colonizing the cave walls. Considering the darkness of the cave-locations, microbes consist mainly in bacteria, but fungi are probably responsible for the filaments and ovoids corpuscules (evoking sporocysts) occurring in innermost parts. Observations at different scales of the morphological features of oxide deposits reveal a structured organisation which varies along the strong environmental gradients (particularly the confinement level) that occur from the entrance to the innermost parts : erected constructions made up of primary concretions become more and more defined and acquire a pseudo-columnar shape. The aspect of biofilms appears to be controlled by the same environmental parameters. In open or relatively open environments, they frequently show a three-dimensional development (with frequent skullcape-like shapes), while in more confined conditions they exhibit a planar layout. These changes reflect either the adaptation of the slime-producing bacteria to the local trophic resources (correlated to the rate of exchange with the open sea) and water movements, or spatial replacement of taxa. It is assumed that slime (mainly composed of water and exopolysaccharides) induces a local increase of the concentration in dissolved Mn and acts as an ion exchange resin that allows the retention of Mn on the functional groups of EPS. These conditions promote the nucleation of Mn oxide crystallites in the slime. Then. the anionic character of Mn oxides in seawater, and their capacity to catalyse the oxydation of Mn2 to Mn4, allow the process to go on without any other biological intervention; thus, the process of crystal growth becomes possible. In caves where Mn is only supplied by seawater (Tremies and 3 PP), the average value of the Mn/Fe ratio of coatings is negatively correlated to the local availability of nutrients. This trend is probably linked to changes in the selectivity of slimes towards the processes of retention of cations, because this ratio is clearly influenced by the occurrence of biofilms. However, independently from trophic resources, the Mn/Fe ratio can be notably increased when additional Mn is provided by the seeping or flowing of continental waters (Bagaud Cave)

The impact of host rock geochemistry on bacterial community structure in oligotrophic cave environments, 2007, Barton H. A. , Taylor N. M. , Kreate M. P. , Springer A. C. , Oehrle S. A. , Bertog J. L.

Despite extremely starved conditions, caves contain surprisingly diverse microbial communities. Our research is geared toward understanding what ecosystems drivers are responsible for this high diversity. To asses the effect of rock fabric and mineralogy, we carried out a comparative geomicrobiology study within Carlsbad Cavern, New Mexico, USA. Samples were collected from two different geologic locations within the cave: WF1 in the Massive Member of the Capitan Formation and sF88 in the calcareous siltstones of the Yates Formation. We examined the organic content at each location using liquid chromatography mass spectroscopy and analyzed microbial community structure using molecular phylogenetic analyses. In order to assess whether microbial activity was leading to changes in the bedrock at each location, the samples were also examined by petrology, X-ray diffraction (XRD) and scanning electron microscopy with energy dispersive X-ray spectroscopy (SEM-EDX). Our results suggest that on the chemically complex Yates Formation (sF88), the microbial community was significantly more diverse than on the limestone surfaces of the Capitan (WF1), despite a higher total number of cells on the latter. Further, the broader diversity of bacterial species at sF88
reflected a larger range of potential metabolic capabilities, presumably due to opportunities to use ions within the rock as nutrients and for chemolithotrophic energy production. The use of these ions at sF88 is supported by the formation of a corrosion residue, presumably through microbial scavenging activities. Our results suggest that rock fabric and mineralogy may be an important driver of ecosystem function and should be carefully reviewed when carrying out microbial community analysis in cave environments.


Size matters: scalar phenomena and a proposal for an ecological definition of 'cave, 2008, Moseley, Max.
Caves, as ecological units, are redefined in terms of the ecologically-significant scalar phenomena that, in contrast with such traditional criteria as perpetual darkness, environmental stability and oligotrophy, are the special characteristics of large cavities (macrocaverns) in rocks. When so defined, 'caves' are ecologically distinct from the mesocaverns and all other subterranean habitats. Some implications of this perspective for the ecological classification of animals found in subterranean habitats are briefly discussed.

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